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Chromosomal integrons are genetically and functionally isolated units of genomes

Investigación publicada en Nucleic Acids Research

10 de octubre de 2024

Integrons are genetic elements that increase the evolvability of bacteria by capturing new genes and stockpiling them in arrays. Sedentary chromosomal integrons (SCIs) can be massive and highly stabilized structures encoding hundreds of genes, whose function remains generally unknown. SCIs have co-evolved with the host for aeons and are highly intertwined with their physiology from a mechanistic point of view. But, paradoxically, other aspects, like their variable content and location within the genome, suggest a high genetic and functional independence. In this work, we have explored the connection of SCIs to their host genome using as a model the Superintegron (SI), a 179-cassette long SCI in the genome of Vibrio cholerae N16961. We have relocated and deleted the SI using SeqDelTA, a novel method that allows to counteract the strong stabilization conferred by toxin-antitoxin systems within the array. We have characterized in depth the impact in V. cholerae`s physiology, measuring fitness, chromosome replication dynamics, persistence, transcriptomics, phenomics, natural competence, virulence and resistance against protist grazing. The deletion of the SI did not produce detectable effects in any condition, proving that-despite millions of years of co-evolution-SCIs are genetically and functionally isolated units of genomes




Blanco P., Trigo de Roza F., Toribio-Celestino L., Garcia-Pastor L., Caselli N., Moron A., Ojeda F., Darracq B., Vergara E., Amaro F., San Millan A., Skovgaard O., Mazel D., Loot C. y Escudero JA..




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Chromosomal integrons are genetically and functionally isolated units of genomes

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Chromosomal integrons are genetically and functionally isolated units of genomes



Participantes:

Universidad ComplutenseDepartamento de Sanidad Animal. Facultad de Veterinaria. Universidad Complutense (UCM).

Universidad ComplutenseServicio de Micobacterias (MYC). Centro de Vigilancia Sanitaria Veterinaria (VISAVET). Universidad Complutense (UCM).

Consejo Superior de Investigaciones CientíficasCentro Nacional de Biotecnología (CNB). Consejo Superior de Investigaciones Científicas (CSIC).

Universidad ComplutenseDepartamento de Ingeniería Química. Facultad de Ciencias Químicas. Universidad Complutense (UCM).

Universidad ComplutenseDepartamento de Genética. Facultad de Ciencias Biológicas. Universidad Complutense (UCM).

Institut PasteurInstitut Pasteur.

Université Sorbonne Paris DescartesUniversité Sorbonne Paris Descartes.

Department of Science and Environment. Roskilde University.







Nucleic Acids Research
FACTOR YEAR Q
16.600 2023

PMID: 39385642

ISSN: 03051048



TÍTULO: Chromosomal integrons are genetically and functionally isolated units of genomes


REVISTA: Nucleic Acids Res


NUMERACIÓN: 1-7


AÑO: 2024


EDITORIAL: Oxford University Press


AUTORES: Blanco P., Trigo de Roza F., Toribio-Celestino L., Garcia-Pastor L., Caselli N., Moron A., Ojeda F., Darracq B., Vergara E., Amaro F., San Millan A., Skovgaard O., Mazel D., Loot C. and Escudero JA..


José Antonio Escudero García-Calderón

DOI: https://doi.org/10.1093/nar/gkae866


CITA ESTA PUBLICACIÓN:

Blanco P., Trigo de Roza F., Toribio-Celestino L., Garcia-Pastor L., Caselli N., Moron A., Ojeda F., Darracq B., Vergara E., Amaro F., San Millan A., Skovgaard O., Mazel D., Loot C. y Escudero JA. Chromosomal integrons are genetically and functionally isolated units of genomes. Nucleic Acids Research. 1-7. 2024. (A). ISSN: 03051048. DOI: 10.1093/nar/gkae866


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